First of all - I wasn't there 400 years ago, so all I am writing now is just straightforward thinking and guessing.
Just a few years before Willem Barentsz set sail to the unknown, the sawing mill powered by the wind was invented and patented. It could be very well possible that the ship of Willem Barentsz was completely constructed with hand sawed planks. And sawing a plank by hand was quite a job, which costed huge amounts of time.
To saw a rabbeted plank by hand was very difficult (even impossible) due to the different angles of sawing, and chisseling a slot in it would be another time consuming labour. And also in those days, time was money, so a plank was sawn in the most efficient way, with no extra labour. So no rabbeting, and no slot.
And even when the planks of Barentsz his ship were sawn with the windmill powered saw it was technically not possible to make a rabbeted plank, as the saws where parrallel to each other. The angle in the plank could simply not being achieved without great difficulties - and thus too expencive. So to my opinion also a no here.
Nowadays we have electricity, and milling machines, so we can make almost every shape and size we want. But at that time this just wasn't there.
Once again - it is just my straightforward thinking of how I would tackle a problem 400 years ago with the tools and possibilities I had.
The shipyards master would say: Too much difficulties? We will not do it, and just go on with our work. The ship must be finished within a short time.
Hans