Is it possible that perhaps the pumps were made from lead or copper? The use of lead back then was fairly common. I will leave this here as food for thought, but came across this:
There were basically only three types of ship bilge pump used from the 1400s to the 1800s:
--burr pumps: basically a cone-shaped leather bucket that drew water up a tube
--chain pumps: a continuous chain with small burrs or buckets to catch water and pull it up, running over upper and lower sprockets
--common or “suction” pump: the earliest representation is from 1431. Use on ships was probably from sometime in late 1400s to early 1500s. The first recorded use of metal parts in ship pumps was 1526. Usually they were made entirely of wood until the late 1700s because the only tools available for boring iron tubes were those to make cannon. In 1712, the first practical steam engine was invented by Newcomen. A steam engine needed the piston and cylinder in very tight tolerances. Initially made by hand, ground and filed…further developments in boring machines were needed before steam could progress, and it wasn’t until those machines were made that all-metal pumps could be manufactured.
www.nps.gov
for the rest of the article.